ACF	ACF
ACF.gls	ACF.gls
ACF.lme	ACF.lme
AIC	AIC
AIC.gls	AIC
AIC.lm	AIC
AIC.lme	AIC
AIC.lmList	AIC
AIC.logLik	AIC.logLik
AIC.nlme	AIC
AIC.nls	AIC
AIC.nlsList	AIC
allCoef	allCoef
anova.gls	anova.gls
anova.lme	anova.lme
as.matrix.corStruct	as.matrix.corStruct
as.matrix.pdMat	as.matrix.pdMat
as.matrix.reStruct	as.matrix.reStruct
asOneFormula	asOneFormula
asTable	asTable
asTable.groupedData	asTable
augPred	augPred
augPred.gls	augPred
augPred.lme	augPred
augPred.lmList	augPred
balancedGrouped	balancedGrouped
BIC	BIC
BIC.gls	BIC
BIC.lm	BIC
BIC.lme	BIC
BIC.lmList	BIC
BIC.logLik	BIC.logLik
BIC.nlme	BIC
BIC.nls	BIC
BIC.nlsList	BIC
coef.corAR1	coef.corStruct
coef.corARMAd	coef.corStruct
coef.corCAR1	coef.corStruct
coef.corCompSymm	coef.corStruct
coef.corHF	coef.corStruct
coef.corIdent	coef.corStruct
coef.corLin	coef.corStruct
coef.corSpatial	coef.corStruct
coef.corSpher	coef.corStruct
coef.corStruct	coef.corStruct
coef.corSymm	coef.corStruct
coef.gls	coef.gls
coef.gnls	coef.gnls
coef.lme	coef.lme
coef.lmList	coef.lmList
coef.modelStruct	coef.modelStruct
coef.pdBlocked	coef.pdMat
coef.pdCompSymm	coef.pdCompSymm
coef.pdDiag	coef.pdDiag
coef.pdIdent	coef.pdIdent
coef.pdMat	coef.pdMat
coef.pdNatural	coef.pdMat
coef.pdSymm	coef.pdMat
coef.reStruct	coef.reStruct
coef.varComb	coef.varFunc
coef.varConstPower	coef.varFunc
coef.varExp	coef.varFunc
coef.varFixed	coef.varFunc
coef.varFunc	coef.varFunc
coef.varIdent	coef.varFunc
coef.varPower	coef.varFunc
coef<-	coef<-
coef<-.corAR1	coef.corStruct
coef<-.corARMAd	coef.corStruct
coef<-.corCAR1	coef.corStruct
coef<-.corCompSymm	coef.corStruct
coef<-.corHF	coef.corStruct
coef<-.corIdent	coef.corStruct
coef<-.corLin	coef.corStruct
coef<-.corSpatial	coef.corStruct
coef<-.corSpher	coef.corStruct
coef<-.corStruct	coef.corStruct
coef<-.corSymm	coef.corStruct
coef<-.modelStruct	coef.modelStruct
coef<-.pdBlocked	coef.pdMat
coef<-.pdMat	coef.pdMat
coef<-.reStruct	coef.reStruct
coef<-.varComb	coef.varFunc
coef<-.varConstPower	coef.varFunc
coef<-.varExp	coef.varFunc
coef<-.varFixed	coef.varFunc
coef<-.varIdent	coef.varFunc
coef<-.varPower	coef.varFunc
collapse	collapse
collapse.groupedData	collapse.groupedData
compareFits	compareFits
comparePred	comparePred
comparePred.gls	comparePred
comparePred.lme	comparePred
comparePred.lmList	comparePred
corAR1	corAR1
corARMA	corARMA
corCAR1	corCAR1
corClasses	corClasses
corCompSymm	corCompSymm
corExp	corExp
corFactor	corFactor
corFactor.compSymm	corFactor.corStruct
corFactor.corAR1	corFactor.corStruct
corFactor.corARMA	corFactor.corStruct
corFactor.corCAR1	corFactor.corStruct
corFactor.corHF	corFactor.corStruct
corFactor.corSpatial	corFactor.corStruct
corFactor.corStruct	corFactor.corStruct
corFactor.corSymm	corFactor.corStruct
corGaus	corGaus
corLin	corLin
corMatrix	corMatrix
corMatrix.compSymm	corMatrix.corStruct
corMatrix.corAR1	corMatrix.corStruct
corMatrix.corARMA	corMatrix.corStruct
corMatrix.corCAR1	corMatrix.corStruct
corMatrix.corHF	corMatrix.corStruct
corMatrix.corSpatial	corMatrix.corStruct
corMatrix.corStruct	corMatrix.corStruct
corMatrix.corSymm	corMatrix.corStruct
corMatrix.pdBlocked	corMatrix.pdMat
corMatrix.pdCompSymm	corMatrix.pdMat
corMatrix.pdDiag	corMatrix.pdMat
corMatrix.pdIdent	corMatrix.pdMat
corMatrix.pdMat	corMatrix.pdMat
corMatrix.pdSymm	corMatrix.pdMat
corMatrix.reStruct	corMatrix.reStruct
corRatio	corRatio
corSpatial	corSpatial
corSpher	corSpher
corSymm	corSymm
covariate<-	covariate<-
covariate<-.varFunc	covariate<-.varFunc
Dim	Dim
Dim.corSpatial	Dim.corSpatial
Dim.corStruct	Dim.corStruct
Dim.pdCompSymm	Dim.pdMat
Dim.pdDiag	Dim.pdMat
Dim.pdIdent	Dim.pdMat
Dim.pdMat	Dim.pdMat
fitted.gls	fitted.gls
fitted.glsStruct	fitted.glsStruct
fitted.gnls	fitted.gnls
fitted.gnlsStruct	fitted.gnlsStruct
fitted.lme	fitted.lme
fitted.lmeStruct	fitted.lmeStruct
fitted.lmList	fitted.lmList
fitted.nlmeStruct	fitted.nlmeStruct
fixed.effects	fixed.effects
fixed.effects.lme	fixed.effects.lme
fixed.effects.lmList	fixed.effects.lmList
fixef	fixed.effects
fixef.lme	fixed.effects.lme
fixef.lmList	fixed.effects.lmList
formula.corStruct	formula.corStruct
formula.gls	formula.gls
formula.gnls	formula.gnls
formula.groupedData	formula.groupedData
formula.lme	formula.lme
formula.lmList	formula.lmList
formula.modelStruct	formula.modelStruct
formula.nlme	formula.nlme
formula.nls	formula.nls
formula.nlsList	formula.nlsList
formula.pdBlocked	formula.pdBlocked
formula.pdMat	formula.pdMat
formula.reStruct	formula.reStruct
formula.varComb	formula.varFunc
formula.varFunc	formula.varFunc
gapply	gapply
getCovariate	getCovariate
getCovariate.corSpatial	getCovariate.corStruct
getCovariate.corStruct	getCovariate.corStruct
getCovariate.data.frame	getCovariate.data.frame
getCovariate.varFunc	getCovariate.varFunc
getCovariateFormula	getCovariateFormula
getData	getData
getData.gls	getData.gls
getData.lme	getData.lme
getData.lmList	getData.lmList
getGroups	getGroups
getGroups.corStruct	getGroups.corStruct
getGroups.data.frame	getGroups.data.frame
getGroups.gls	getGroups.gls
getGroups.lme	getGroups.lme
getGroups.lmList	getGroups.lmList
getGroups.varFunc	getGroups.varFunc
getGroupsFormula	getGroupsFormula
getGroupsFormula.default	getGroupsFormula
getGroupsFormula.gls	getGroupsFormula.gls
getGroupsFormula.lme	getGroupsFormula.lme
getGroupsFormula.lmList	getGroupsFormula.lmList
getGroupsFormula.reStruct	getGroupsFormula.reStruct
getResponse	getResponse
getResponse.data.frame	getResponse.data.frame
getResponse.gls	getResponse.gls
getResponse.lme	getResponse.lme
getResponse.lmList	getResponse.lmList
getResponseFormula	getResponseFormula
gls	gls
glsControl	glsControl
glsObject	glsObject
glsStruct	glsStruct
gnls	gnls
gnlsControl	gnlsControl
gnlsObject	gnlsObject
gnlsStruct	gnlsStruct
groupedData	groupedData
gsummary	gsummary
initialize	initialize
initialize.corAR1	initialize.corStruct
initialize.corARMA	initialize.corStruct
initialize.corCAR1	initialize.corStruct
initialize.corCompSymm	initialize.corStruct
initialize.corHF	initialize.corStruct
initialize.corIdent	initialize.corStruct
initialize.corLin	initialize.corStruct
initialize.corSpatial	initialize.corStruct
initialize.corSpher	initialize.corStruct
initialize.corStruct	initialize.corStruct
initialize.corSymm	initialize.corStruct
initialize.glsStruct	initialize.glsStruct
initialize.lmeStruct	initialize.lmeStruct
initialize.reStruct	initialize.reStruct
initialize.varComb	initialize.varFunc
initialize.varConstPower	initialize.varFunc
initialize.varExp	initialize.varFunc
initialize.varFixed	initialize.varFunc
initialize.varFunc	initialize.varFunc
initialize.varIdent	initialize.varFunc
initialize.varPower	initialize.varFunc
intervals	intervals
intervals.gls	intervals.gls
intervals.lme	intervals.lme
intervals.lmList	intervals.lmList
isBalanced	isBalanced
isBalanced.groupedData	isBalanced
isInitialized	isInitialized
isInitialized.pdBlocked	isInitialized
isInitialized.pdMat	isInitialized
isInitialized.reStruct	isInitialized.reStruct
lme	lme
lme.formula	lme
lme.groupedData	lme.groupedData
lme.lmList	lme.lmList
lmeControl	lmeControl
lmeObject	lmeObject
lmeScale	lmeScale
lmeStruct	lmeStruct
lmList	lmList
lmList.formula	lmList
lmList.groupedData	lmList.groupedData
logDet	logDet
logDet.corStruct	logDet.corStruct
logDet.pdBlocked	logDet.pdMat
logDet.pdCompSymm	logDet.pdMat
logDet.pdDiag	logDet.pdMat
logDet.pdIdent	logDet.pdMat
logDet.pdMat	logDet.pdMat
logDet.pdSymm	logDet.pdMat
logDet.reStruct	logDet.reStruct
logLik.corStruct	logLik.corStruct
logLik.gls	logLik.gls
logLik.glsStruct	logLik.glsStruct
logLik.gnls	logLik.gnls
logLik.gnlsStruct	logLik.gnlsStruct
logLik.lm	logLik.lm
logLik.lme	logLik.lme
logLik.lmeStruct	logLik.lmeStruct
logLik.lmeStructInt	logLik.lmeStruct
logLik.lmList	logLik.lmList
logLik.reStruct	logLik.reStruct
logLik.varComb	logLik.varFunc
logLik.varFunc	logLik.varFunc
matrix<-	matrix<-
matrix<-.pdBlocked	matrix<-.pdMat
matrix<-.pdMat	matrix<-.pdMat
matrix<-.reStruct	matrix<-.reStruct
model.matrix.reStruct	model.matrix.reStruct
Names	Names
Names.formula	Names.formula
Names.pdBlocked	Names.pdBlocked
Names.pdMat	Names.pdMat
Names.reStruct	Names.reStruct
Names<-	Names
Names<-.pdMat	Names.pdMat
Names<-.reStruct	Names.reStruct
needUpdate	needUpdate
needUpdate.default	needUpdate
needUpdate.modelStruct	needUpdate.modelStruct
needUpdate.varComb	needUpdate
needUpdate.varIdent	needUpdate
nlme	nlme
nlme.formula	nlme
nlme.nlsList	nlme.nlsList
nlmeControl	nlmeControl
nlmeObject	nlmeObject
nlmeStruct	nlmeStruct
nlsList	nlsList
nlsList.formula	nlsList
nlsList.selfStart	nlsList.selfStart
pairs.compareFits	pairs.compareFits
pairs.lme	pairs.lme
pairs.lmList	pairs.lmList
pdBlocked	pdBlocked
pdClasses	pdClasses
pdCompSymm	pdCompSymm
pdConstruct	pdConstruct
pdConstruct.pdBlocked	pdConstruct.pdBlocked
pdConstruct.pdCompSymm	pdConstruct
pdConstruct.pdDiag	pdConstruct
pdConstruct.pdIdent	pdConstruct
pdConstruct.pdMat	pdConstruct
pdConstruct.pdNatural	pdConstruct
pdConstruct.pdSymm	pdConstruct
pdDiag	pdDiag
pdFactor	pdFactor
pdFactor.pdBlocked	pdFactor
pdFactor.pdCompSymm	pdFactor
pdFactor.pdDiag	pdFactor
pdFactor.pdIdent	pdFactor
pdFactor.pdMat	pdFactor
pdFactor.pdNatural	pdFactor
pdFactor.reStruct	pdFactor.reStruct
pdIdent	pdIdent
pdMat	pdMat
pdMatrix	pdMatrix
pdMatrix.pdBlocked	pdMatrix
pdMatrix.pdCompSymm	pdMatrix
pdMatrix.pdDiag	pdMatrix
pdMatrix.pdIdent	pdMatrix
pdMatrix.pdMat	pdMatrix
pdMatrix.pdSymm	pdMatrix
pdMatrix.reStruct	pdMatrix.reStruct
pdNatural	pdNatural
pdSymm	pdSymm
plot.ACF	plot.ACF
plot.augPred	plot.augPred
plot.compareFits	plot.compareFits
plot.gls	plot.gls
plot.intervals.lmList	plot.intervals.lmList
plot.lme	plot.lme
plot.lmList	plot.lmList
plot.nffGroupedData	plot.nffGroupedData
plot.nfnGroupedData	plot.nfnGroupedData
plot.nmGroupedData	plot.nmGroupedData
plot.ranef.lme	plot.ranef.lme
plot.ranef.lmList	plot.ranef.lmList
plot.simulate.lme	simulate.lme
plot.Variogram	plot.Variogram
pooledSD	pooledSD
predict.gls	predict.gls
predict.gnls	predict.gnls
predict.lme	predict.lme
predict.lmList	predict.lmList
predict.nlme	predict.nlme
print.anova.lme	print.anova.lme
print.corHF	print.corStruct
print.corStruct	print.corStruct
print.corSymm	print.corStruct
print.gls	print.gls
print.groupedData	print.groupedData
print.intervals.gls	print.intervals.gls
print.intervals.lme	print.intervals.lme
print.lme	print.lme
print.lmList	print.lmList
print.modelStruct	print.modelStruct
print.pdMat	print.pdMat
print.reStruct	print.reStruct
print.summary.corStruct	print.summary.corStruct
print.summary.gls	print.summary.gls
print.summary.lme	print.summary.lme
print.summary.lmList	print.summary.lmList
print.summary.modelStruct	print.summary.modelStruct
print.summary.pdMat	print.summary.pdMat
print.summary.varComb	print.summary.varFunc
print.summary.varFixed	print.summary.varFunc
print.summary.varFunc	print.summary.varFunc
print.varComb	print.varFunc
print.varFunc	print.varFunc
pruneLevels	pruneLevels
pruneLevels.factor	pruneLevels
pruneLevels.ordered	pruneLevels
qqnorm.gls	qqnorm.gls
qqnorm.lme	qqnorm.lme
random.effects	random.effects
random.effects.lme	random.effects.lme
random.effects.lmList	random.effects.lmList
ranef	random.effects
ranef.lme	random.effects.lme
ranef.lmList	random.effects.lmList
recalc	recalc
recalc.corAR1	recalc.corStruct
recalc.corARMA	recalc.corStruct
recalc.corCAR1	recalc.corStruct
recalc.corCompSymm	recalc.corStruct
recalc.corHF	recalc.corStruct
recalc.corIdent	recalc.corStruct
recalc.corSpatial	recalc.corStruct
recalc.corStruct	recalc.corStruct
recalc.corSymm	recalc.corStruct
recalc.modelStruct	recalc.modelStruct
recalc.reStruct	recalc.reStruct
recalc.varFunc	recalc.varFunc
residuals.gls	residuals.gls
residuals.glsStruct	residuals.glsStruct
residuals.gnls	residuals.gnls
residuals.gnlsStruct	residuals.gnlsStruct
residuals.lme	residuals.lme
residuals.lmeStruct	residuals.lmeStruct
residuals.lmList	residuals.lmList
residuals.nlmeStruct	residuals.nlmeStruct
reStruct	reStruct
simulate.lme	simulate.lme
solve.pdBlocked	solve.pdMat
solve.pdDiag	solve.pdMat
solve.pdIdent	solve.pdMat
solve.pdMat	solve.pdMat
solve.pdNatural	solve.pdMat
solve.reStruct	solve.reStruct
splitFormula	splitFormula
summary.corAR1	summary.corStruct
summary.corARMA	summary.corStruct
summary.corCAR1	summary.corStruct
summary.corCompSymm	summary.corStruct
summary.corExp	summary.corStruct
summary.corGaus	summary.corStruct
summary.corHF	summary.corStruct
summary.corIdent	summary.corStruct
summary.corLin	summary.corStruct
summary.corSpher	summary.corStruct
summary.corStruct	summary.corStruct
summary.corSymm	summary.corStruct
summary.gls	summary.gls
summary.lme	summary.lme
summary.lmList	summary.lmList
summary.modelStruct	summary.modelStruct
summary.nlsList	summary.nlsList
summary.pdBlocked	summary.pdMat
summary.pdCompSymm	summary.pdMat
summary.pdDiag	summary.pdMat
summary.pdIdent	summary.pdMat
summary.pdMat	summary.pdMat
summary.pdNatural	summary.pdMat
summary.varComb	summary.varFunc
summary.varConstPower	summary.varFunc
summary.VarCorr.lme	VarCorr
summary.varExp	summary.varFunc
summary.varFixed	summary.varFunc
summary.varFunc	summary.varFunc
summary.varIdent	summary.varFunc
summary.varPower	summary.varFunc
update.gls	update.gls
update.gnls	update.gnls
update.groupedData	update.groupedData
update.lme	update.lme
update.lmList	update.lmList
update.modelStruct	update.modelStruct
update.nlme	update.nlme
update.nlsList	update.nlsList
update.varComb	update.varFunc
update.varConstPower	update.varFunc
update.varExpon	update.varFunc
update.varFunc	update.varFunc
update.varPower	update.varFunc
varClasses	varClasses
varComb	varComb
varConstPower	varConstPower
VarCorr	VarCorr
VarCorr.lme	VarCorr
varExp	varExp
varFixed	varFixed
varFunc	varFunc
varIdent	varIdent
Variogram	Variogram
Variogram.corExp	Variogram.corExp
Variogram.corGaus	Variogram.corGaus
Variogram.corLin	Variogram.corLin
Variogram.corRatio	Variogram.corRatio
Variogram.corSpatial	Variogram.corSpatial
Variogram.corSpher	Variogram.corSpher
Variogram.default	Variogram.default
Variogram.gls	Variogram.gls
Variogram.lme	Variogram.lme
varPower	varPower
varWeights	varWeights
varWeights.glsStruct	varWeights.glsStruct
varWeights.lmeStruct	varWeights.lmeStruct
varWeights.varComb	varWeights
varWeights.varFunc	varWeights
[.pdBlocked	Extract.pdMat
[.pdMat	Extract.pdMat
[<-.pdMat	Extract.pdMat
